The ConSurf Server

SERVER FOR THE IDENTIFICATION OF FUNCTIONAL REGIONS IN BIOPOLYMERS

The ConSurf Server

SERVER FOR THE IDENTIFICATION OF FUNCTIONAL REGIONS IN BIOPOLYMERS

ConSurf Job Status Page - FINISHED

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Job title


1ehz

Date


17/06/2022

Running Parameters

Structure


PDB ID: 1ehz

Chain identifier: A

Phylogenetic Progress


Neighbor Joining with ML distance

Conservation Scores


Method of Calculation: Bayesian

Alignment


MSA File: msa_file_fasta.aln

Query sequence name in MSA file: 4TNA"

Run Progress



Extract sequence from PDB file
Select best evolutionary model
Calculate conservation scores
Project conservation scores onto the molecule

Running Messages



Please note: Before the analysis took place, modified nucleotides read from SEQRES field in the PDB were converted back to the original nucleotides:
2MG > g H2U > u M2G > g OMC > c OMG > g YYG > g PSU > u 5MC > c 7MG > g 5MU > u 1MA > a .
For a description of modified nucleotides in PDB files click here.

The Score of the alignment between the sequence extracted from the MSA file and the sequence extracted from the ATOM field of the PDB file is 77% identity.
See pairwise alignment. The calculation continues nevertheless.

The best evolutionary model was selected to be: GTR. (details).