The ConSurf Server

SERVER FOR THE IDENTIFICATION OF FUNCTIONAL REGIONS IN BIOPOLYMERS

The ConSurf Server

SERVER FOR THE IDENTIFICATION OF FUNCTIONAL REGIONS IN BIOPOLYMERS

ConSurf Job Status Page - FINISHED

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Job title


Phe-tRNA

Date


08/12/2024

Running Parameters

Structure


PDB ID: 1EHZ

Chain identifier: A

Phylogenetic Progress


Neighbor Joining with ML distance

Conservation Scores


Method of Calculation: Bayesian

Model of substitution for nucleotides: Best fit

Alignment


Multiple Sequence Alignment is built using MAFFT

The Homologues are collected from NT

Homolog search algorithm: HMMER

HMMER E-value: 0.001

No. of HMMER Iterations: 1

Maximal %ID Between Sequences : 95

Minimal %ID For Homologs : 60

150 sequences that sample the list of homologues to the query.

Run Progress



Extract sequence from PDB file
Find sequence homologs
Remove redundant and unrelated sequences
Align sequences
Select best evolutionary model
Calculate conservation scores
Project conservation scores onto the molecule

Running Messages



Please note: Before the analysis took place, modified nucleotides read from SEQRES field in the PDB were converted back to the original nucleotides:
2MG > G H2U > U M2G > G OMC > C OMG > G YYG > G PSU > U 5MC > C 7MG > G 5MU > U 1MA > A .
For a description of modified nucleotides in PDB files click here.

There are 10254 HMMER hits. 219 of them are unique, including the query.
The calculation is performed on a sample of 150 sequences that represent the list of homologues to the query.

Here is the list of sequences that produced significant alignments, but were not chosen as hits.

Warnning: The seqeunce 'Input_seq_SEQRES_A' contains a 'U' replaced by 'T'

Warnning: The seqeunce 'gi|OW618030.1|1931841_1931914|1.8e-10|Metschnikowia_zobellii_genome_assembly__chromosome__3' contains a 'U' replaced by 'T'

Warnning: The seqeunce 'gi|CP083464.1|1555181_1555109|1.5e-09|Cyberlindnera_sargentensis_strain_SHA_17.2_chromosome_I' contains a 'U' replaced by 'T'

Warnning: The seqeunce 'gi|LS992273.1|45274_45357|1.6e-09|Candida__hispaniensis_strain_CBS_9996_genome_assembly__chromosome__D' contains a 'U' replaced by 'T'

Warnning: The seqeunce 'gi|HG316470.1|30805_30890|1.8e-09|Zygosaccharomyces_bailii_CLIB_213_genomic__scaffold17' contains a 'U' replaced by 'T'

Warnning: The seqeunce 'gi|LS992272.1|882670_882586|3e-09|Candida__hispaniensis_strain_CBS_9996_genome_assembly__chromosome__C' contains a 'U' replaced by 'T'

Warnning: The seqeunce 'gi|X02710.1|2_76|5.1e-09|Neurospora_crassa_transfer_RNA-Phe__GAA' contains a 'U' replaced by 'T'

Warnning: The seqeunce 'gi|CP002503.1|237766_237857|5.9e-09|Eremothecium_cymbalariae_DBVPG#7215_chromosome_7__complete_sequence' contains a 'U' replaced by 'T'

Warnning: The seqeunce 'gi|CP002503.1|708145_708052|7.5e-09|Eremothecium_cymbalariae_DBVPG#7215_chromosome_7__complete_sequence' contains a 'U' replaced by 'T'

Warnning: The seqeunce 'gi|CP017553.1|1117847_1117936|7.8e-09|Yarrowia_lipolytica_strain_CLIB89_W29__chromosome_1A__complete_sequence' contains a 'U' replaced by 'T'

Warnning: The seqeunce 'gi|OX291660.1|3523152_3523223|8.8e-09|Blastobotrys_aristata_strain_UCD613_genome_assembly__chromosome__1' contains a 'U' replaced by 'T'

Warnning: The seqeunce 'gi|CP002499.1|425633_425542|1.2e-08|Eremothecium_cymbalariae_DBVPG#7215_chromosome_3__complete_sequence' contains a 'U' replaced by 'T'

Warnning: The seqeunce 'gi|CP017556.1|1742481_1742572|1.3e-08|Yarrowia_lipolytica_strain_CLIB89_W29__chromosome_1D__complete_sequence' contains a 'U' replaced by 'T'

Warnning: The seqeunce 'gi|OX291448.1|792721_792626|1.4e-08|Torulaspora_quercuum_strain_UCD657_genome_assembly__chromosome__8' contains a 'U' replaced by 'T'

Warnning: The seqeunce 'gi|CP138596.1|221207_221112|1.6e-08|Kazachstania_servazzii_strain_CDLB-YE05_chromosome_2' contains a 'U' replaced by 'T'

Warnning: The seqeunce 'gi|HE650822.1|1089452_1089357|1.6e-08|Kazachstania_africana_CBS_2517_chromosome_2__complete_genome' contains a 'U' replaced by 'T'

Warnning: The seqeunce 'gi|CP059247.1|793115_793208|1.7e-08|Torulaspora_globosa_strain_CBS764_chromosome_2' contains a 'U' replaced by 'T'

Warnning: The seqeunce 'gi|HE576752.1|552754_552848|1.9e-08|Naumovozyma_castellii_CBS_4309_chromosome_1__complete_genome' contains a 'U' replaced by 'T'

Warnning: The seqeunce 'gi|OX291660.1|4034020_4034090|2.2e-08|Blastobotrys_aristata_strain_UCD613_genome_assembly__chromosome__1' contains a 'U' replaced by 'T'

Warnning: The seqeunce 'gi|CP028447.1|652408_652312|2.2e-08|Yarrowia_lipolytica_strain_H222__CLIB_80__chromosome_F' contains a 'U' replaced by 'T'

Warnning: The seqeunce 'gi|CP002501.1|359631_359539|2.2e-08|Eremothecium_cymbalariae_DBVPG#7215_chromosome_5__complete_sequence' contains a 'U' replaced by 'T'

Warnning: The seqeunce 'gi|HE978324.1|200930_200831|4.1e-08|Kazachstania_naganishii_CBS_8797_chromosome_11__complete_genome' contains a 'U' replaced by 'T'

Warnning: The seqeunce 'gi|CP017553.1|1386253_1386343|4.3e-08|Yarrowia_lipolytica_strain_CLIB89_W29__chromosome_1A__complete_sequence' contains a 'U' replaced by 'T'

Warnning: The seqeunce 'gi|CP017553.1|1398245_1398335|4.9e-08|Yarrowia_lipolytica_strain_CLIB89_W29__chromosome_1A__complete_sequence' contains a 'U' replaced by 'T'

Warnning: The seqeunce 'gi|CP073217.1|238001_238082|4.9e-08|Saccharomycopsis_phalluae_strain_GUCC_202006_chromosome_6' contains a 'U' replaced by 'T'

Warnning: The seqeunce 'gi|HE576752.1|345963_346063|5e-08|Naumovozyma_castellii_CBS_4309_chromosome_1__complete_genome' contains a 'U' replaced by 'T'

Warnning: The seqeunce 'gi|CP020323.1|362671_362763|5.9e-08|Saccharomyces_paradoxus_strain_UWOPS91-917.1_chromosome_XIV__complete_sequence' contains a 'U' replaced by 'T'

Warnning: The seqeunce 'gi|CP012817.1|3277771_3277684|6e-08|Saccharomycopsis_fibuligera_x_Saccharomycopsis_cf._fibuligera_strain_KJJ81_chromosome_B2__complete_sequence' contains a 'U' replaced by 'T'

Warnning: The seqeunce 'gi|HE806317.1|1267210_1267119|6.4e-08|Tetrapisispora_blattae_CBS_6284_chromosome_2__complete_genome' contains a 'U' replaced by 'T'

Warnning: The seqeunce 'gi|CU928169.1|669271_669178|6.6e-08|Lachancea_thermotolerans_CBS_6340_chromosome_E_complete_sequence' contains a 'U' replaced by 'T'

Warnning: The seqeunce 'gi|CP014500.1|828540_828628|6.8e-08|Sugiyamaella_lignohabitans_strain_CBS_10342_chromosome_C__complete_sequence' contains a 'U' replaced by 'T'

Warnning: The seqeunce 'gi|CU928179.1|813980_814071|7.5e-08|Zygosaccharomyces_rouxii_strain_CBS732_chromosome_G_complete_sequence' contains a 'U' replaced by 'T'

Warnning: The seqeunce 'gi|OX291660.1|2521184_2521116|8e-08|Blastobotrys_aristata_strain_UCD613_genome_assembly__chromosome__1' contains a 'U' replaced by 'T'

Warnning: The seqeunce 'gi|CP128569.1|827487_827559|8.4e-08|Lodderomyces_elongisporus_strain_NRRL_YB-4239_chromosome_4' contains a 'U' replaced by 'T'

Warnning: The seqeunce 'gi|CP014585.1|2265469_2265560|8.7e-08|Komagataella_pastoris_strain_ATCC_28485_chromosome_2__complete_sequence' contains a 'U' replaced by 'T'

Warnning: The seqeunce 'gi|AP024664.1|2770380_2770452|8.8e-08|Cyberlindnera_jadinii_NBRC_0988_DNA__chromosome__1__nearly_complete_genome' contains a 'U' replaced by 'T'

Warnning: The seqeunce 'gi|M22369.1|6_97|9.3e-08|Synthetic_yeast_tRNA-Phe-TTA_gene' contains a 'U' replaced by 'T'

Warnning: The seqeunce 'gi|CP049011.1|373220_373311|1.1e-07|Saccharomyces_pastorianus_strain_CBS_1483_chromosome_SeXIV' contains a 'U' replaced by 'T'

Warnning: The seqeunce 'gi|CP014501.1|1361532_1361622|1.1e-07|Sugiyamaella_lignohabitans_strain_CBS_10342_chromosome_A__complete_sequence' contains a 'U' replaced by 'T'

Warnning: The seqeunce 'gi|CP014501.1|901323_901231|1.1e-07|Sugiyamaella_lignohabitans_strain_CBS_10342_chromosome_A__complete_sequence' contains a 'U' replaced by 'T'

Warnning: The seqeunce 'gi|CP046459.1|558538_558448|1.2e-07|Saccharomyces_cerevisiae_strain_SK23_chromosome_XVI' contains a 'U' replaced by 'T'

Warnning: The seqeunce 'gi|HE978316.1|593837_593939|1.3e-07|Kazachstania_naganishii_CBS_8797_chromosome_3__complete_genome' contains a 'U' replaced by 'T'

Warnning: The seqeunce 'gi|OY752145.1|1613511_1613582|1.4e-07|Entomortierella_parvispora_genome_assembly__chromosome__6' contains a 'U' replaced by 'T'

Warnning: The seqeunce 'gi|CP060327.1|326499_326427|1.4e-07|Ogataea_polymorpha_strain_CBS_4732_chromosome_6' contains a 'U' replaced by 'T'

Warnning: The seqeunce 'gi|CP012810.1|3364220_3364126|1.5e-07|Saccharomycopsis_fibuligera_x_Saccharomycopsis_cf._fibuligera_strain_KJJ81_chromosome_A2__complete_sequence' contains a 'U' replaced by 'T'

Warnning: The seqeunce 'gi|CP021088.1|1005110_1005039|1.6e-07|Pichia_kudriavzevii_strain_SJP_chromosome_1' contains a 'U' replaced by 'T'

Warnning: The seqeunce 'gi|CP073216.1|1055711_1055629|1.7e-07|Saccharomycopsis_phalluae_strain_GUCC_202006_chromosome_5' contains a 'U' replaced by 'T'

Warnning: The seqeunce 'gi|CP017555.1|2684925_2685019|1.8e-07|Yarrowia_lipolytica_strain_CLIB89_W29__chromosome_1C__complete_sequence' contains a 'U' replaced by 'T'

Warnning: The seqeunce 'gi|CP025321.1|381774_381682|1.9e-07|Saccharomycopsis_malanga_strain_KCN26_chromosome_1' contains a 'U' replaced by 'T'

Warnning: The seqeunce 'gi|CP025325.1|2003983_2003890|2e-07|Saccharomycopsis_malanga_strain_KCN26_chromosome_5' contains a 'U' replaced by 'T'

Warnning: The seqeunce 'gi|CP134415.1|524064_524155|2.2e-07|Kazachstania_bulderi_strain_NRRL_Y-27205_chromosome_II' contains a 'U' replaced by 'T'

Warnning: The seqeunce 'gi|HE580269.1|444932_445025|2.2e-07|Naumovozyma_dairenensis_CBS_421_chromosome_3__complete_genome' contains a 'U' replaced by 'T'

Warnning: The seqeunce 'gi|HE580269.1|94122_94029|2.4e-07|Naumovozyma_dairenensis_CBS_421_chromosome_3__complete_genome' contains a 'U' replaced by 'T'

Warnning: The seqeunce 'gi|CP014503.1|623877_623783|2.4e-07|Sugiyamaella_lignohabitans_strain_CBS_10342_chromosome_B__complete_sequence' contains a 'U' replaced by 'T'

Warnning: The seqeunce 'gi|CP073218.1|773216_773144|2.4e-07|Saccharomycopsis_phalluae_strain_GUCC_202006_chromosome_7' contains a 'U' replaced by 'T'

Warnning: The seqeunce 'gi|M17531.1|1_96|2.5e-07|Saccharomyces_cerevisiae_tRNA-Phe-GAA_gene' contains a 'U' replaced by 'T'

Warnning: The seqeunce 'gi|HE580271.1|874990_875084|2.6e-07|Naumovozyma_dairenensis_CBS_421_chromosome_5__complete_genome' contains a 'U' replaced by 'T'

Warnning: The seqeunce 'gi|AC277004.1|31309_31217|2.7e-07|Yamadazyma_tenuis_clone_GAPS09-D06__complete_sequence' contains a 'U' replaced by 'T'

Warnning: The seqeunce 'gi|CP024752.1|2151784_2151878|2.8e-07|Hyphopichia_pseudoburtonii_isolate_makgeolli_chromosome_2__complete_sequence' contains a 'U' replaced by 'T'

Warnning: The seqeunce 'gi|CP099442.1|39765_39693|3.8e-07|Pichia_terricola_strain_0621_chromosome_I' contains a 'U' replaced by 'T'

Warnning: The seqeunce 'gi|AF233343.1|4918_5016|4.1e-07|Candida_glabrata_Msh4p-related_protein__Mnm4-related_protein__centromere_binding_protein_1__CBF1___and_serin/threonin_kinase_genes__complete_cds;_and_unknown_gene' contains a 'U' replaced by 'T'

Warnning: The seqeunce 'gi|CP012816.1|2290967_2291053|4.3e-07|Saccharomycopsis_fibuligera_x_Saccharomycopsis_cf._fibuligera_strain_KJJ81_chromosome_B1__complete_sequence' contains a 'U' replaced by 'T'

Warnning: The seqeunce 'gi|HE580267.1|302636_302729|5.4e-07|Naumovozyma_dairenensis_CBS_421_chromosome_1__complete_genome' contains a 'U' replaced by 'T'

Warnning: The seqeunce 'gi|CP012815.1|1056599_1056512|5.6e-07|Saccharomycopsis_fibuligera_x_Saccharomycopsis_cf._fibuligera_strain_KJJ81_chromosome_A7__complete_sequence' contains a 'U' replaced by 'T'

Warnning: The seqeunce 'gi|CP005281.2|437489_437392|6.4e-07|Saccharomyces_cerevisiae_YJM1549_chromosome_VII_sequence' contains a 'U' replaced by 'T'

Warnning: The seqeunce 'gi|FO082054.1|942404_942320|6.9e-07|Pichia_sorbitophila_strain_CBS_7064_chromosome_F_complete_sequence' contains a 'U' replaced by 'T'

Warnning: The seqeunce 'gi|CP012822.1|1050130_1050040|7.2e-07|Saccharomycopsis_fibuligera_x_Saccharomycopsis_cf._fibuligera_strain_KJJ81_chromosome_B7__complete_sequence' contains a 'U' replaced by 'T'

Warnning: The seqeunce 'gi|CP012817.1|1309650_1309739|7.6e-07|Saccharomycopsis_fibuligera_x_Saccharomycopsis_cf._fibuligera_strain_KJJ81_chromosome_B2__complete_sequence' contains a 'U' replaced by 'T'

Warnning: The seqeunce 'gi|CP012822.1|657235_657324|8e-07|Saccharomycopsis_fibuligera_x_Saccharomycopsis_cf._fibuligera_strain_KJJ81_chromosome_B7__complete_sequence' contains a 'U' replaced by 'T'

Warnning: The seqeunce 'gi|AP012216.1|1147133_1147204|8.8e-07|Kluyveromyces_marxianus_DMKU3-1042_DNA__complete_genome__chromosome_4' contains a 'U' replaced by 'T'

Warnning: The seqeunce 'gi|CP012826.1|1632512_1632422|1e-06|Saccharomycopsis_fibuligera_strain_KPH12_chromosome_4__complete_sequence' contains a 'U' replaced by 'T'

Warnning: The seqeunce 'gi|K00346.1|3_75|1.1e-06|Lupin_minor_Phe-tRNA' contains a 'U' replaced by 'T'

Warnning: The seqeunce 'gi|CP012815.1|656920_657011|1.3e-06|Saccharomycopsis_fibuligera_x_Saccharomycopsis_cf._fibuligera_strain_KJJ81_chromosome_A7__complete_sequence' contains a 'U' replaced by 'T'

Warnning: The seqeunce 'gi|CP012819.1|1622701_1622610|1.5e-06|Saccharomycopsis_fibuligera_x_Saccharomycopsis_cf._fibuligera_strain_KJJ81_chromosome_B4__complete_sequence' contains a 'U' replaced by 'T'

Warnning: The seqeunce 'gi|1SZ1_E|1_76|1.6e-06|Chain_E__T-RNA__76-MER' contains a 'U' replaced by 'T'

Warnning: The seqeunce 'gi|CP025321.1|258685_258593|1.6e-06|Saccharomycopsis_malanga_strain_KCN26_chromosome_1' contains a 'U' replaced by 'T'

Warnning: The seqeunce 'gi|CP025326.1|230221_230315|1.7e-06|Saccharomycopsis_malanga_strain_KCN26_chromosome_6' contains a 'U' replaced by 'T'

Warnning: The seqeunce 'gi|CP025324.1|1994755_1994846|1.8e-06|Saccharomycopsis_malanga_strain_KCN26_chromosome_4' contains a 'U' replaced by 'T'

Warnning: The seqeunce 'gi|NC_013359.1|126879_126807|1.9e-06|Bryopsis_hypnoides_chloroplast__complete_genome' contains a 'U' replaced by 'T'

Warnning: The seqeunce 'gi|CP095437.1|635535_635626|1.9e-06|Debaryomycetaceae_sp._JAC-2022a_strain_SDSM-11251829_chromosome_5' contains a 'U' replaced by 'T'

Warnning: The seqeunce 'gi|CP115648.1|2566886_2566999|2.3e-06|Magnusiomyces_capitatus_strain_LA-1_chromosome_1' contains a 'U' replaced by 'T'

Warnning: The seqeunce 'gi|CP012818.1|2634582_2634674|3.4e-06|Saccharomycopsis_fibuligera_x_Saccharomycopsis_cf._fibuligera_strain_KJJ81_chromosome_B3__complete_sequence' contains a 'U' replaced by 'T'

Warnning: The seqeunce 'gi|OX291660.1|8875_8947|4.2e-06|Blastobotrys_aristata_strain_UCD613_genome_assembly__chromosome__1' contains a 'U' replaced by 'T'

Warnning: The seqeunce 'gi|OX337236.1|1996418_1996349|6.3e-06|Epithemia_pelagica_genome_assembly__chromosome__9' contains a 'U' replaced by 'T'

Warnning: The seqeunce 'gi|CP012813.1|2105605_2105702|9e-06|Saccharomycopsis_fibuligera_x_Saccharomycopsis_cf._fibuligera_strain_KJJ81_chromosome_A5__complete_sequence' contains a 'U' replaced by 'T'

Warnning: The seqeunce 'gi|CP039352.1|35324610_35324538|1e-05|Vigna_unguiculata_cultivar_Xiabao_2_chromosome_Vu10' contains a 'U' replaced by 'T'

Warnning: The seqeunce 'gi|OY288291.1|13028269_13028200|1.1e-05|Hibiscus_tridactylites_genome_assembly__chromosome__27' contains a 'U' replaced by 'T'

Warnning: The seqeunce 'gi|LS992275.1|619126_619209|1.2e-05|Candida__hispaniensis_strain_CBS_9996_genome_assembly__chromosome__F' contains a 'U' replaced by 'T'

Warnning: The seqeunce 'gi|CP063137.1|744621_744692|1.4e-05|Brettanomyces_bruxellensis_strain_UCD_2041_chromosome_9' contains a 'U' replaced by 'T'

Warnning: The seqeunce 'gi|OY757079.1|26115959_26115887|2e-05|Pyrus_communis_genome_assembly__chromosome__12' contains a 'U' replaced by 'T'

Warnning: The seqeunce 'gi|OW971867.1|2416605_2416534|2.5e-05|Mucor_piriformis_genome_assembly__chromosome__1' contains a 'U' replaced by 'T'

Warnning: The seqeunce 'gi|CP095434.1|163217_163307|2.5e-05|Debaryomycetaceae_sp._JAC-2022a_strain_SDSM-11251829_chromosome_2' contains a 'U' replaced by 'T'

Warnning: The seqeunce 'gi|3ICQ_D|2_67|2.8e-05|Chain_D__RNA__62-MER' contains a 'U' replaced by 'T'

Warnning: The seqeunce 'gi|X68593.1|3354_3440|2.9e-05|P.tannophilus_GAL_10_gene_for_UDP-galactose-4-epimerase' contains a 'U' replaced by 'T'

Warnning: The seqeunce 'gi|CP097820.1|6283164_6283237|3.2e-05|Chlamydomonas_reinhardtii_strain_CC-5816_chromosome_10' contains a 'U' replaced by 'T'

Warnning: The seqeunce 'gi|OX344736.1|2338001_2338064|3.2e-05|Pleurotus_ostreatus_genome_assembly__chromosome__2' contains a 'U' replaced by 'T'

Warnning: The seqeunce 'gi|CP103002.1|178594_178502|3.4e-05|Allantophomopsis_lycopodina_strain_ATCC_66958_chromosome_15' contains a 'U' replaced by 'T'

Warnning: The seqeunce 'gi|CP071494.1|3736179_3736089|3.6e-05|Podospora_comata_strain_Wa139-_chromosome_2__complete_sequence' contains a 'U' replaced by 'T'

Warnning: The seqeunce 'gi|XM_018278146.2|459_548|3.7e-05|Pseudogymnoascus_verrucosus_uncharacterized_protein__VE01_08726___mRNA' contains a 'U' replaced by 'T'

Warnning: The seqeunce 'gi|CP012818.1|1669439_1669541|3.7e-05|Saccharomycopsis_fibuligera_x_Saccharomycopsis_cf._fibuligera_strain_KJJ81_chromosome_B3__complete_sequence' contains a 'U' replaced by 'T'

Warnning: The seqeunce 'gi|CP126376.1|32752298_32752228|3.8e-05|Musa_acuminata_subsp._malaccensis_isolate_AA_chromosome_7' contains a 'U' replaced by 'T'

Warnning: The seqeunce 'gi|CP136213.1|122311_122222|4.1e-05|Botrytis_fabae_isolate_G12_chromosome_Bfab08' contains a 'U' replaced by 'T'

Warnning: The seqeunce 'gi|CP063136.1|104257_104187|4.1e-05|Brettanomyces_bruxellensis_strain_UCD_2041_chromosome_8' contains a 'U' replaced by 'T'

Warnning: The seqeunce 'gi|CP143009.1|93098_93165|4.2e-05|Hanseniaspora_guilliermondii_strain_CBS_18551_chromosome_VIII' contains a 'U' replaced by 'T'

Warnning: The seqeunce 'gi|AP028935.1|80247808_80247875|4.2e-05|Solanum_lycopersicum_Micro-Tom_DNA__chromosome_1__draft_genome_sequence' contains a 'U' replaced by 'T'

Warnning: The seqeunce 'gi|OY101124.1|1131607_1131549|4.4e-05|Nitzschia_sp._pyKryTriq1_genome_assembly__chromosome__10' contains a 'U' replaced by 'T'

Warnning: The seqeunce 'gi|CP071499.1|2665531_2665441|4.6e-05|Podospora_comata_strain_Wa139-_chromosome_7__complete_sequence' contains a 'U' replaced by 'T'

Warnning: The seqeunce 'gi|LR026989.1|2988574_2988485|4.8e-05|Blumeria_graminis_f._sp._tritici_genome_assembly__chromosome__Bgt_-06' contains a 'U' replaced by 'T'

Warnning: The seqeunce 'gi|OY755224.1|10907696_10907766|4.8e-05|Euphorbia_lathyris_genome_assembly__chromosome__5' contains a 'U' replaced by 'T'

Warnning: The seqeunce 'gi|AP024999.1|2148736_2148808|5.2e-05|Coccomyxa_sp._Obi_DNA__chromosome_12__complete_sequence' contains a 'U' replaced by 'T'

Warnning: The seqeunce 'gi|OZ005719.1|12167437_12167509|5.3e-05|Labrus_bergylta_genome_assembly__chromosome__11' contains a 'U' replaced by 'T'

Warnning: The seqeunce 'gi|LR026988.1|8866089_8866000|5.4e-05|Blumeria_graminis_f._sp._tritici_genome_assembly__chromosome__Bgt_-05' contains a 'U' replaced by 'T'

Warnning: The seqeunce 'gi|LR026988.1|2460155_2460066|5.6e-05|Blumeria_graminis_f._sp._tritici_genome_assembly__chromosome__Bgt_-05' contains a 'U' replaced by 'T'

Warnning: The seqeunce 'gi|XR_002713435.1|133_61|5.7e-05|PREDICTED__Cucurbita_moschata_uncharacterized_LOC111460599__LOC111460599___transcript_variant_X8__ncRNA' contains a 'U' replaced by 'T'

Warnning: The seqeunce 'gi|XM_025901631.1|12066_11999|5.7e-05|PREDICTED__Oreochromis_niloticus_retrovirus-related_Pol_polyprotein_from_transposon_412__LOC102082561___transcript_variant_X1__mRNA' contains a 'U' replaced by 'T'

Warnning: The seqeunce 'gi|CP034210.1|353934_354024|5.8e-05|Pyricularia_oryzae_isolate_MZ5-1-6_chromosome_7__complete_sequence' contains a 'U' replaced by 'T'

Warnning: The seqeunce 'gi|OY734958.1|1566198_1566134|6e-05|Spergularia_bocconei_genome_assembly__chromosome__17' contains a 'U' replaced by 'T'

Warnning: The seqeunce 'gi|CP109671.1|1215970_1215878|6e-05|Fusarium_avenaceum_strain_WV21P1A_chromosome_3' contains a 'U' replaced by 'T'

Warnning: The seqeunce 'gi|CP015980.1|2238022_2237918|6.4e-05|Saccharomycopsis_fibuligera_strain_ATCC_36309_chromosome_3__partial_sequence' contains a 'U' replaced by 'T'

Warnning: The seqeunce 'gi|CP052049.1|927010_927102|6.8e-05|Fusarium_oxysporum_Fo47_chromosome_XII' contains a 'U' replaced by 'T'

Warnning: The seqeunce 'gi|OY288291.1|13021793_13021722|6.8e-05|Hibiscus_tridactylites_genome_assembly__chromosome__27' contains a 'U' replaced by 'T'

Warnning: The seqeunce 'gi|CP017816.1|2045840_2045749|7e-05|Sclerotinia_sclerotiorum_chromosome_3__complete_sequence' contains a 'U' replaced by 'T'

Warnning: The seqeunce 'gi|CP028443.1|387003_386924|7.2e-05|Yarrowia_lipolytica_strain_H222__CLIB_80__chromosome_B' contains a 'U' replaced by 'T'

Warnning: The seqeunce 'gi|CP015980.1|1701250_1701354|7.4e-05|Saccharomycopsis_fibuligera_strain_ATCC_36309_chromosome_3__partial_sequence' contains a 'U' replaced by 'T'

Warnning: The seqeunce 'gi|AP024993.1|2689785_2689713|8e-05|Coccomyxa_sp._Obi_DNA__chromosome_6__complete_sequence' contains a 'U' replaced by 'T'

Warnning: The seqeunce 'gi|CP025648.1|15047658_15047728|8e-05|Ipomoea_trifida_cultivar_NCNSP0306_chromosome_5' contains a 'U' replaced by 'T'

Warnning: The seqeunce 'gi|CP123894.1|4352866_4352803|8.8e-05|Brassica_napus_cultivar_Xiang5A_chromosome_19' contains a 'U' replaced by 'T'

Warnning: The seqeunce 'gi|LR026990.1|2544288_2544374|9e-05|Blumeria_graminis_f._sp._tritici_genome_assembly__chromosome__Bgt_-07' contains a 'U' replaced by 'T'

Warnning: The seqeunce 'gi|CP115650.1|2689362_2689456|9.4e-05|Magnusiomyces_capitatus_strain_LA-1_chromosome_3' contains a 'U' replaced by 'T'

Warnning: The seqeunce 'gi|OU594956.1|400023_400081|9.4e-05|Phaeodactylum_tricornutum_isolate_CCAP_1055/1_genome_assembly__chromosome__15' contains a 'U' replaced by 'T'

Warnning: The seqeunce 'gi|CP068502.1|331958_331876|9.5e-05|Stagonosporopsis_rhizophila_strain_XDPOP-RS-16W_chromosome_2' contains a 'U' replaced by 'T'

Warnning: The seqeunce 'gi|CP071499.1|2638857_2638765|0.00011|Podospora_comata_strain_Wa139-_chromosome_7__complete_sequence' contains a 'U' replaced by 'T'

Warnning: The seqeunce 'gi|LR026989.1|10085620_10085705|0.00012|Blumeria_graminis_f._sp._tritici_genome_assembly__chromosome__Bgt_-06' contains a 'U' replaced by 'T'

Warnning: The seqeunce 'gi|CP003003.1|4615533_4615627|0.00012|Myceliophthora_thermophila_ATCC_42464_chromosome_2__complete_sequence' contains a 'U' replaced by 'T'

Warnning: The seqeunce 'gi|OZ002728.1|47220772_47220711|0.00013|Polygonum_maritimum_genome_assembly__chromosome__1' contains a 'U' replaced by 'T'

Warnning: The seqeunce 'gi|OY987318.1|2055508_2055579|0.00014|Geranium_rotundifolium_genome_assembly__chromosome__8' contains a 'U' replaced by 'T'

Warnning: The seqeunce 'gi|CP025648.1|15052844_15052903|0.00014|Ipomoea_trifida_cultivar_NCNSP0306_chromosome_5' contains a 'U' replaced by 'T'

Warnning: The seqeunce 'gi|CP039352.1|35320240_35320171|0.00015|Vigna_unguiculata_cultivar_Xiabao_2_chromosome_Vu10' contains a 'U' replaced by 'T'

Warnning: The seqeunce 'gi|OX459106.1|11688377_11688307|0.00015|Metridium_senile_genome_assembly__chromosome__12' contains a 'U' replaced by 'T'

Warnning: The seqeunce 'gi|CP115648.1|333777_333873|0.00016|Magnusiomyces_capitatus_strain_LA-1_chromosome_1' contains a 'U' replaced by 'T'

Warnning: The seqeunce 'gi|CP088258.1|5565056_5564962|0.00016|Fusarium_asiaticum_strain_KCTC_16664_chromosome_2' contains a 'U' replaced by 'T'

Warnning: The seqeunce 'gi|XR_002713435.1|320_250|0.00017|PREDICTED__Cucurbita_moschata_uncharacterized_LOC111460599__LOC111460599___transcript_variant_X8__ncRNA' contains a 'U' replaced by 'T'

Warnning: The seqeunce 'gi|LR026993.1|6285245_6285159|0.00018|Blumeria_graminis_f._sp._tritici_genome_assembly__chromosome__Bgt_-10' contains a 'U' replaced by 'T'

Warnning: The seqeunce 'gi|OZ005719.1|12169432_12169500|0.00019|Labrus_bergylta_genome_assembly__chromosome__11' contains a 'U' replaced by 'T'

Warnning: The seqeunce 'gi|LR699109.1|6528061_6528134|0.00019|Asterias_rubens_genome_assembly__chromosome__18' contains a 'U' replaced by 'T'

Warnning: The seqeunce 'gi|LN649231.1|6936680_6936587|0.00019|Fusarium_venenatum_strain_A3/5_genome_assembly__chromosome__III' contains a 'U' replaced by 'T'

Warnning: The seqeunce 'gi|CP109669.1|2789043_2789136|0.0002|Fusarium_avenaceum_strain_WV21P1A_chromosome_7' contains a 'U' replaced by 'T'

Warnning: The seqeunce 'gi|XR_002812630.1|686_629|0.00021|PREDICTED__Cucurbita_pepo_subsp._pepo_uncharacterized_LOC111779014__LOC111779014___ncRNA' contains a 'U' replaced by 'T'

Warnning: The seqeunce 'gi|CP048715.1|955762_955834|0.00021|Cyberlindnera_fabianii_isolate_JOY008_chromosome_1' contains a 'U' replaced by 'T'

Warnning: The seqeunce 'gi|CP085828.1|3923160_3923067|0.00021|Calonectria_ilicicola_strain_GDYJ169_chromosome_4' contains a 'U' replaced by 'T'

The best evolutionary model was selected to be: GTR. (details).