The ConSurf Server
SERVER FOR THE IDENTIFICATION OF FUNCTIONAL REGIONS IN BIOPOLYMERS
Job title
1ehz
Date
17/06/2022
Running Parameters
Structure
PDB ID: 1ehz
Chain identifier: A
Phylogenetic Progress
Neighbor Joining with ML distance
Conservation Scores
Method of Calculation: Bayesian
Alignment
MSA File: msa_file_fasta.aln
Query sequence name in MSA file: 4TNA"
Run Progress
✔
Extract sequence from PDB file
✔
Select best evolutionary model
✔
Calculate conservation scores
✔
Project conservation scores onto the molecule
Running Messages
Please note: Before the analysis took place, modified nucleotides read from SEQRES field in the PDB were converted back to the original nucleotides:
2MG > g H2U > u M2G > g OMC > c OMG > g YYG > g PSU > u 5MC > c 7MG > g 5MU > u 1MA > a .
For a description of modified nucleotides in PDB files click here.
The Score of the alignment between the sequence extracted from the MSA file and the sequence extracted from the ATOM field of the PDB file is 77% identity.
See pairwise alignment. The calculation continues nevertheless.
The best evolutionary model was selected to be: GTR. (details).