The ConSurf Server
SERVER FOR THE IDENTIFICATION OF FUNCTIONAL REGIONS IN BIOPOLYMERS
Job title
Phe-tRNA
Date
08/12/2024
Running Parameters
Structure
PDB ID: 1EHZ
Chain identifier: A
Phylogenetic Progress
Neighbor Joining with ML distance
Conservation Scores
Method of Calculation: Bayesian
Model of substitution for nucleotides: Best fit
Alignment
Multiple Sequence Alignment is built using MAFFT
The Homologues are collected from NT
Homolog search algorithm: HMMER
HMMER E-value: 0.001
No. of HMMER Iterations: 1
Maximal %ID Between Sequences : 95
Minimal %ID For Homologs : 60
150 sequences that sample the list of homologues to the query.
Run Progress
✔
Extract sequence from PDB file
✔
Find sequence homologs
✔
Remove redundant and unrelated sequences
✔
Align sequences
✔
Select best evolutionary model
✔
Calculate conservation scores
✔
Project conservation scores onto the molecule
Running Messages
Please note: Before the analysis took place, modified nucleotides read from SEQRES field in the PDB were converted back to the original nucleotides:
2MG > G H2U > U M2G > G OMC > C OMG > G YYG > G PSU > U 5MC > C 7MG > G 5MU > U 1MA > A .
For a description of modified nucleotides in PDB files click here.
There are 10254 HMMER hits. 219 of them are unique, including the query.
The calculation is performed on a sample of 150 sequences that represent the list of homologues to the query.
Here is the list of sequences that produced significant alignments, but were not chosen as hits.
Warnning: The seqeunce 'Input_seq_SEQRES_A' contains a 'U' replaced by 'T'
Warnning: The seqeunce 'gi|OW618030.1|1931841_1931914|1.8e-10|Metschnikowia_zobellii_genome_assembly__chromosome__3' contains a 'U' replaced by 'T'
Warnning: The seqeunce 'gi|CP083464.1|1555181_1555109|1.5e-09|Cyberlindnera_sargentensis_strain_SHA_17.2_chromosome_I' contains a 'U' replaced by 'T'
Warnning: The seqeunce 'gi|LS992273.1|45274_45357|1.6e-09|Candida__hispaniensis_strain_CBS_9996_genome_assembly__chromosome__D' contains a 'U' replaced by 'T'
Warnning: The seqeunce 'gi|HG316470.1|30805_30890|1.8e-09|Zygosaccharomyces_bailii_CLIB_213_genomic__scaffold17' contains a 'U' replaced by 'T'
Warnning: The seqeunce 'gi|LS992272.1|882670_882586|3e-09|Candida__hispaniensis_strain_CBS_9996_genome_assembly__chromosome__C' contains a 'U' replaced by 'T'
Warnning: The seqeunce 'gi|X02710.1|2_76|5.1e-09|Neurospora_crassa_transfer_RNA-Phe__GAA' contains a 'U' replaced by 'T'
Warnning: The seqeunce 'gi|CP002503.1|237766_237857|5.9e-09|Eremothecium_cymbalariae_DBVPG#7215_chromosome_7__complete_sequence' contains a 'U' replaced by 'T'
Warnning: The seqeunce 'gi|CP002503.1|708145_708052|7.5e-09|Eremothecium_cymbalariae_DBVPG#7215_chromosome_7__complete_sequence' contains a 'U' replaced by 'T'
Warnning: The seqeunce 'gi|CP017553.1|1117847_1117936|7.8e-09|Yarrowia_lipolytica_strain_CLIB89_W29__chromosome_1A__complete_sequence' contains a 'U' replaced by 'T'
Warnning: The seqeunce 'gi|OX291660.1|3523152_3523223|8.8e-09|Blastobotrys_aristata_strain_UCD613_genome_assembly__chromosome__1' contains a 'U' replaced by 'T'
Warnning: The seqeunce 'gi|CP002499.1|425633_425542|1.2e-08|Eremothecium_cymbalariae_DBVPG#7215_chromosome_3__complete_sequence' contains a 'U' replaced by 'T'
Warnning: The seqeunce 'gi|CP017556.1|1742481_1742572|1.3e-08|Yarrowia_lipolytica_strain_CLIB89_W29__chromosome_1D__complete_sequence' contains a 'U' replaced by 'T'
Warnning: The seqeunce 'gi|OX291448.1|792721_792626|1.4e-08|Torulaspora_quercuum_strain_UCD657_genome_assembly__chromosome__8' contains a 'U' replaced by 'T'
Warnning: The seqeunce 'gi|CP138596.1|221207_221112|1.6e-08|Kazachstania_servazzii_strain_CDLB-YE05_chromosome_2' contains a 'U' replaced by 'T'
Warnning: The seqeunce 'gi|HE650822.1|1089452_1089357|1.6e-08|Kazachstania_africana_CBS_2517_chromosome_2__complete_genome' contains a 'U' replaced by 'T'
Warnning: The seqeunce 'gi|CP059247.1|793115_793208|1.7e-08|Torulaspora_globosa_strain_CBS764_chromosome_2' contains a 'U' replaced by 'T'
Warnning: The seqeunce 'gi|HE576752.1|552754_552848|1.9e-08|Naumovozyma_castellii_CBS_4309_chromosome_1__complete_genome' contains a 'U' replaced by 'T'
Warnning: The seqeunce 'gi|OX291660.1|4034020_4034090|2.2e-08|Blastobotrys_aristata_strain_UCD613_genome_assembly__chromosome__1' contains a 'U' replaced by 'T'
Warnning: The seqeunce 'gi|CP028447.1|652408_652312|2.2e-08|Yarrowia_lipolytica_strain_H222__CLIB_80__chromosome_F' contains a 'U' replaced by 'T'
Warnning: The seqeunce 'gi|CP002501.1|359631_359539|2.2e-08|Eremothecium_cymbalariae_DBVPG#7215_chromosome_5__complete_sequence' contains a 'U' replaced by 'T'
Warnning: The seqeunce 'gi|HE978324.1|200930_200831|4.1e-08|Kazachstania_naganishii_CBS_8797_chromosome_11__complete_genome' contains a 'U' replaced by 'T'
Warnning: The seqeunce 'gi|CP017553.1|1386253_1386343|4.3e-08|Yarrowia_lipolytica_strain_CLIB89_W29__chromosome_1A__complete_sequence' contains a 'U' replaced by 'T'
Warnning: The seqeunce 'gi|CP017553.1|1398245_1398335|4.9e-08|Yarrowia_lipolytica_strain_CLIB89_W29__chromosome_1A__complete_sequence' contains a 'U' replaced by 'T'
Warnning: The seqeunce 'gi|CP073217.1|238001_238082|4.9e-08|Saccharomycopsis_phalluae_strain_GUCC_202006_chromosome_6' contains a 'U' replaced by 'T'
Warnning: The seqeunce 'gi|HE576752.1|345963_346063|5e-08|Naumovozyma_castellii_CBS_4309_chromosome_1__complete_genome' contains a 'U' replaced by 'T'
Warnning: The seqeunce 'gi|CP020323.1|362671_362763|5.9e-08|Saccharomyces_paradoxus_strain_UWOPS91-917.1_chromosome_XIV__complete_sequence' contains a 'U' replaced by 'T'
Warnning: The seqeunce 'gi|CP012817.1|3277771_3277684|6e-08|Saccharomycopsis_fibuligera_x_Saccharomycopsis_cf._fibuligera_strain_KJJ81_chromosome_B2__complete_sequence' contains a 'U' replaced by 'T'
Warnning: The seqeunce 'gi|HE806317.1|1267210_1267119|6.4e-08|Tetrapisispora_blattae_CBS_6284_chromosome_2__complete_genome' contains a 'U' replaced by 'T'
Warnning: The seqeunce 'gi|CU928169.1|669271_669178|6.6e-08|Lachancea_thermotolerans_CBS_6340_chromosome_E_complete_sequence' contains a 'U' replaced by 'T'
Warnning: The seqeunce 'gi|CP014500.1|828540_828628|6.8e-08|Sugiyamaella_lignohabitans_strain_CBS_10342_chromosome_C__complete_sequence' contains a 'U' replaced by 'T'
Warnning: The seqeunce 'gi|CU928179.1|813980_814071|7.5e-08|Zygosaccharomyces_rouxii_strain_CBS732_chromosome_G_complete_sequence' contains a 'U' replaced by 'T'
Warnning: The seqeunce 'gi|OX291660.1|2521184_2521116|8e-08|Blastobotrys_aristata_strain_UCD613_genome_assembly__chromosome__1' contains a 'U' replaced by 'T'
Warnning: The seqeunce 'gi|CP128569.1|827487_827559|8.4e-08|Lodderomyces_elongisporus_strain_NRRL_YB-4239_chromosome_4' contains a 'U' replaced by 'T'
Warnning: The seqeunce 'gi|CP014585.1|2265469_2265560|8.7e-08|Komagataella_pastoris_strain_ATCC_28485_chromosome_2__complete_sequence' contains a 'U' replaced by 'T'
Warnning: The seqeunce 'gi|AP024664.1|2770380_2770452|8.8e-08|Cyberlindnera_jadinii_NBRC_0988_DNA__chromosome__1__nearly_complete_genome' contains a 'U' replaced by 'T'
Warnning: The seqeunce 'gi|M22369.1|6_97|9.3e-08|Synthetic_yeast_tRNA-Phe-TTA_gene' contains a 'U' replaced by 'T'
Warnning: The seqeunce 'gi|CP049011.1|373220_373311|1.1e-07|Saccharomyces_pastorianus_strain_CBS_1483_chromosome_SeXIV' contains a 'U' replaced by 'T'
Warnning: The seqeunce 'gi|CP014501.1|1361532_1361622|1.1e-07|Sugiyamaella_lignohabitans_strain_CBS_10342_chromosome_A__complete_sequence' contains a 'U' replaced by 'T'
Warnning: The seqeunce 'gi|CP014501.1|901323_901231|1.1e-07|Sugiyamaella_lignohabitans_strain_CBS_10342_chromosome_A__complete_sequence' contains a 'U' replaced by 'T'
Warnning: The seqeunce 'gi|CP046459.1|558538_558448|1.2e-07|Saccharomyces_cerevisiae_strain_SK23_chromosome_XVI' contains a 'U' replaced by 'T'
Warnning: The seqeunce 'gi|HE978316.1|593837_593939|1.3e-07|Kazachstania_naganishii_CBS_8797_chromosome_3__complete_genome' contains a 'U' replaced by 'T'
Warnning: The seqeunce 'gi|OY752145.1|1613511_1613582|1.4e-07|Entomortierella_parvispora_genome_assembly__chromosome__6' contains a 'U' replaced by 'T'
Warnning: The seqeunce 'gi|CP060327.1|326499_326427|1.4e-07|Ogataea_polymorpha_strain_CBS_4732_chromosome_6' contains a 'U' replaced by 'T'
Warnning: The seqeunce 'gi|CP012810.1|3364220_3364126|1.5e-07|Saccharomycopsis_fibuligera_x_Saccharomycopsis_cf._fibuligera_strain_KJJ81_chromosome_A2__complete_sequence' contains a 'U' replaced by 'T'
Warnning: The seqeunce 'gi|CP021088.1|1005110_1005039|1.6e-07|Pichia_kudriavzevii_strain_SJP_chromosome_1' contains a 'U' replaced by 'T'
Warnning: The seqeunce 'gi|CP073216.1|1055711_1055629|1.7e-07|Saccharomycopsis_phalluae_strain_GUCC_202006_chromosome_5' contains a 'U' replaced by 'T'
Warnning: The seqeunce 'gi|CP017555.1|2684925_2685019|1.8e-07|Yarrowia_lipolytica_strain_CLIB89_W29__chromosome_1C__complete_sequence' contains a 'U' replaced by 'T'
Warnning: The seqeunce 'gi|CP025321.1|381774_381682|1.9e-07|Saccharomycopsis_malanga_strain_KCN26_chromosome_1' contains a 'U' replaced by 'T'
Warnning: The seqeunce 'gi|CP025325.1|2003983_2003890|2e-07|Saccharomycopsis_malanga_strain_KCN26_chromosome_5' contains a 'U' replaced by 'T'
Warnning: The seqeunce 'gi|CP134415.1|524064_524155|2.2e-07|Kazachstania_bulderi_strain_NRRL_Y-27205_chromosome_II' contains a 'U' replaced by 'T'
Warnning: The seqeunce 'gi|HE580269.1|444932_445025|2.2e-07|Naumovozyma_dairenensis_CBS_421_chromosome_3__complete_genome' contains a 'U' replaced by 'T'
Warnning: The seqeunce 'gi|HE580269.1|94122_94029|2.4e-07|Naumovozyma_dairenensis_CBS_421_chromosome_3__complete_genome' contains a 'U' replaced by 'T'
Warnning: The seqeunce 'gi|CP014503.1|623877_623783|2.4e-07|Sugiyamaella_lignohabitans_strain_CBS_10342_chromosome_B__complete_sequence' contains a 'U' replaced by 'T'
Warnning: The seqeunce 'gi|CP073218.1|773216_773144|2.4e-07|Saccharomycopsis_phalluae_strain_GUCC_202006_chromosome_7' contains a 'U' replaced by 'T'
Warnning: The seqeunce 'gi|M17531.1|1_96|2.5e-07|Saccharomyces_cerevisiae_tRNA-Phe-GAA_gene' contains a 'U' replaced by 'T'
Warnning: The seqeunce 'gi|HE580271.1|874990_875084|2.6e-07|Naumovozyma_dairenensis_CBS_421_chromosome_5__complete_genome' contains a 'U' replaced by 'T'
Warnning: The seqeunce 'gi|AC277004.1|31309_31217|2.7e-07|Yamadazyma_tenuis_clone_GAPS09-D06__complete_sequence' contains a 'U' replaced by 'T'
Warnning: The seqeunce 'gi|CP024752.1|2151784_2151878|2.8e-07|Hyphopichia_pseudoburtonii_isolate_makgeolli_chromosome_2__complete_sequence' contains a 'U' replaced by 'T'
Warnning: The seqeunce 'gi|CP099442.1|39765_39693|3.8e-07|Pichia_terricola_strain_0621_chromosome_I' contains a 'U' replaced by 'T'
Warnning: The seqeunce 'gi|AF233343.1|4918_5016|4.1e-07|Candida_glabrata_Msh4p-related_protein__Mnm4-related_protein__centromere_binding_protein_1__CBF1___and_serin/threonin_kinase_genes__complete_cds;_and_unknown_gene' contains a 'U' replaced by 'T'
Warnning: The seqeunce 'gi|CP012816.1|2290967_2291053|4.3e-07|Saccharomycopsis_fibuligera_x_Saccharomycopsis_cf._fibuligera_strain_KJJ81_chromosome_B1__complete_sequence' contains a 'U' replaced by 'T'
Warnning: The seqeunce 'gi|HE580267.1|302636_302729|5.4e-07|Naumovozyma_dairenensis_CBS_421_chromosome_1__complete_genome' contains a 'U' replaced by 'T'
Warnning: The seqeunce 'gi|CP012815.1|1056599_1056512|5.6e-07|Saccharomycopsis_fibuligera_x_Saccharomycopsis_cf._fibuligera_strain_KJJ81_chromosome_A7__complete_sequence' contains a 'U' replaced by 'T'
Warnning: The seqeunce 'gi|CP005281.2|437489_437392|6.4e-07|Saccharomyces_cerevisiae_YJM1549_chromosome_VII_sequence' contains a 'U' replaced by 'T'
Warnning: The seqeunce 'gi|FO082054.1|942404_942320|6.9e-07|Pichia_sorbitophila_strain_CBS_7064_chromosome_F_complete_sequence' contains a 'U' replaced by 'T'
Warnning: The seqeunce 'gi|CP012822.1|1050130_1050040|7.2e-07|Saccharomycopsis_fibuligera_x_Saccharomycopsis_cf._fibuligera_strain_KJJ81_chromosome_B7__complete_sequence' contains a 'U' replaced by 'T'
Warnning: The seqeunce 'gi|CP012817.1|1309650_1309739|7.6e-07|Saccharomycopsis_fibuligera_x_Saccharomycopsis_cf._fibuligera_strain_KJJ81_chromosome_B2__complete_sequence' contains a 'U' replaced by 'T'
Warnning: The seqeunce 'gi|CP012822.1|657235_657324|8e-07|Saccharomycopsis_fibuligera_x_Saccharomycopsis_cf._fibuligera_strain_KJJ81_chromosome_B7__complete_sequence' contains a 'U' replaced by 'T'
Warnning: The seqeunce 'gi|AP012216.1|1147133_1147204|8.8e-07|Kluyveromyces_marxianus_DMKU3-1042_DNA__complete_genome__chromosome_4' contains a 'U' replaced by 'T'
Warnning: The seqeunce 'gi|CP012826.1|1632512_1632422|1e-06|Saccharomycopsis_fibuligera_strain_KPH12_chromosome_4__complete_sequence' contains a 'U' replaced by 'T'
Warnning: The seqeunce 'gi|K00346.1|3_75|1.1e-06|Lupin_minor_Phe-tRNA' contains a 'U' replaced by 'T'
Warnning: The seqeunce 'gi|CP012815.1|656920_657011|1.3e-06|Saccharomycopsis_fibuligera_x_Saccharomycopsis_cf._fibuligera_strain_KJJ81_chromosome_A7__complete_sequence' contains a 'U' replaced by 'T'
Warnning: The seqeunce 'gi|CP012819.1|1622701_1622610|1.5e-06|Saccharomycopsis_fibuligera_x_Saccharomycopsis_cf._fibuligera_strain_KJJ81_chromosome_B4__complete_sequence' contains a 'U' replaced by 'T'
Warnning: The seqeunce 'gi|1SZ1_E|1_76|1.6e-06|Chain_E__T-RNA__76-MER' contains a 'U' replaced by 'T'
Warnning: The seqeunce 'gi|CP025321.1|258685_258593|1.6e-06|Saccharomycopsis_malanga_strain_KCN26_chromosome_1' contains a 'U' replaced by 'T'
Warnning: The seqeunce 'gi|CP025326.1|230221_230315|1.7e-06|Saccharomycopsis_malanga_strain_KCN26_chromosome_6' contains a 'U' replaced by 'T'
Warnning: The seqeunce 'gi|CP025324.1|1994755_1994846|1.8e-06|Saccharomycopsis_malanga_strain_KCN26_chromosome_4' contains a 'U' replaced by 'T'
Warnning: The seqeunce 'gi|NC_013359.1|126879_126807|1.9e-06|Bryopsis_hypnoides_chloroplast__complete_genome' contains a 'U' replaced by 'T'
Warnning: The seqeunce 'gi|CP095437.1|635535_635626|1.9e-06|Debaryomycetaceae_sp._JAC-2022a_strain_SDSM-11251829_chromosome_5' contains a 'U' replaced by 'T'
Warnning: The seqeunce 'gi|CP115648.1|2566886_2566999|2.3e-06|Magnusiomyces_capitatus_strain_LA-1_chromosome_1' contains a 'U' replaced by 'T'
Warnning: The seqeunce 'gi|CP012818.1|2634582_2634674|3.4e-06|Saccharomycopsis_fibuligera_x_Saccharomycopsis_cf._fibuligera_strain_KJJ81_chromosome_B3__complete_sequence' contains a 'U' replaced by 'T'
Warnning: The seqeunce 'gi|OX291660.1|8875_8947|4.2e-06|Blastobotrys_aristata_strain_UCD613_genome_assembly__chromosome__1' contains a 'U' replaced by 'T'
Warnning: The seqeunce 'gi|OX337236.1|1996418_1996349|6.3e-06|Epithemia_pelagica_genome_assembly__chromosome__9' contains a 'U' replaced by 'T'
Warnning: The seqeunce 'gi|CP012813.1|2105605_2105702|9e-06|Saccharomycopsis_fibuligera_x_Saccharomycopsis_cf._fibuligera_strain_KJJ81_chromosome_A5__complete_sequence' contains a 'U' replaced by 'T'
Warnning: The seqeunce 'gi|CP039352.1|35324610_35324538|1e-05|Vigna_unguiculata_cultivar_Xiabao_2_chromosome_Vu10' contains a 'U' replaced by 'T'
Warnning: The seqeunce 'gi|OY288291.1|13028269_13028200|1.1e-05|Hibiscus_tridactylites_genome_assembly__chromosome__27' contains a 'U' replaced by 'T'
Warnning: The seqeunce 'gi|LS992275.1|619126_619209|1.2e-05|Candida__hispaniensis_strain_CBS_9996_genome_assembly__chromosome__F' contains a 'U' replaced by 'T'
Warnning: The seqeunce 'gi|CP063137.1|744621_744692|1.4e-05|Brettanomyces_bruxellensis_strain_UCD_2041_chromosome_9' contains a 'U' replaced by 'T'
Warnning: The seqeunce 'gi|OY757079.1|26115959_26115887|2e-05|Pyrus_communis_genome_assembly__chromosome__12' contains a 'U' replaced by 'T'
Warnning: The seqeunce 'gi|OW971867.1|2416605_2416534|2.5e-05|Mucor_piriformis_genome_assembly__chromosome__1' contains a 'U' replaced by 'T'
Warnning: The seqeunce 'gi|CP095434.1|163217_163307|2.5e-05|Debaryomycetaceae_sp._JAC-2022a_strain_SDSM-11251829_chromosome_2' contains a 'U' replaced by 'T'
Warnning: The seqeunce 'gi|3ICQ_D|2_67|2.8e-05|Chain_D__RNA__62-MER' contains a 'U' replaced by 'T'
Warnning: The seqeunce 'gi|X68593.1|3354_3440|2.9e-05|P.tannophilus_GAL_10_gene_for_UDP-galactose-4-epimerase' contains a 'U' replaced by 'T'
Warnning: The seqeunce 'gi|CP097820.1|6283164_6283237|3.2e-05|Chlamydomonas_reinhardtii_strain_CC-5816_chromosome_10' contains a 'U' replaced by 'T'
Warnning: The seqeunce 'gi|OX344736.1|2338001_2338064|3.2e-05|Pleurotus_ostreatus_genome_assembly__chromosome__2' contains a 'U' replaced by 'T'
Warnning: The seqeunce 'gi|CP103002.1|178594_178502|3.4e-05|Allantophomopsis_lycopodina_strain_ATCC_66958_chromosome_15' contains a 'U' replaced by 'T'
Warnning: The seqeunce 'gi|CP071494.1|3736179_3736089|3.6e-05|Podospora_comata_strain_Wa139-_chromosome_2__complete_sequence' contains a 'U' replaced by 'T'
Warnning: The seqeunce 'gi|XM_018278146.2|459_548|3.7e-05|Pseudogymnoascus_verrucosus_uncharacterized_protein__VE01_08726___mRNA' contains a 'U' replaced by 'T'
Warnning: The seqeunce 'gi|CP012818.1|1669439_1669541|3.7e-05|Saccharomycopsis_fibuligera_x_Saccharomycopsis_cf._fibuligera_strain_KJJ81_chromosome_B3__complete_sequence' contains a 'U' replaced by 'T'
Warnning: The seqeunce 'gi|CP126376.1|32752298_32752228|3.8e-05|Musa_acuminata_subsp._malaccensis_isolate_AA_chromosome_7' contains a 'U' replaced by 'T'
Warnning: The seqeunce 'gi|CP136213.1|122311_122222|4.1e-05|Botrytis_fabae_isolate_G12_chromosome_Bfab08' contains a 'U' replaced by 'T'
Warnning: The seqeunce 'gi|CP063136.1|104257_104187|4.1e-05|Brettanomyces_bruxellensis_strain_UCD_2041_chromosome_8' contains a 'U' replaced by 'T'
Warnning: The seqeunce 'gi|CP143009.1|93098_93165|4.2e-05|Hanseniaspora_guilliermondii_strain_CBS_18551_chromosome_VIII' contains a 'U' replaced by 'T'
Warnning: The seqeunce 'gi|AP028935.1|80247808_80247875|4.2e-05|Solanum_lycopersicum_Micro-Tom_DNA__chromosome_1__draft_genome_sequence' contains a 'U' replaced by 'T'
Warnning: The seqeunce 'gi|OY101124.1|1131607_1131549|4.4e-05|Nitzschia_sp._pyKryTriq1_genome_assembly__chromosome__10' contains a 'U' replaced by 'T'
Warnning: The seqeunce 'gi|CP071499.1|2665531_2665441|4.6e-05|Podospora_comata_strain_Wa139-_chromosome_7__complete_sequence' contains a 'U' replaced by 'T'
Warnning: The seqeunce 'gi|LR026989.1|2988574_2988485|4.8e-05|Blumeria_graminis_f._sp._tritici_genome_assembly__chromosome__Bgt_-06' contains a 'U' replaced by 'T'
Warnning: The seqeunce 'gi|OY755224.1|10907696_10907766|4.8e-05|Euphorbia_lathyris_genome_assembly__chromosome__5' contains a 'U' replaced by 'T'
Warnning: The seqeunce 'gi|AP024999.1|2148736_2148808|5.2e-05|Coccomyxa_sp._Obi_DNA__chromosome_12__complete_sequence' contains a 'U' replaced by 'T'
Warnning: The seqeunce 'gi|OZ005719.1|12167437_12167509|5.3e-05|Labrus_bergylta_genome_assembly__chromosome__11' contains a 'U' replaced by 'T'
Warnning: The seqeunce 'gi|LR026988.1|8866089_8866000|5.4e-05|Blumeria_graminis_f._sp._tritici_genome_assembly__chromosome__Bgt_-05' contains a 'U' replaced by 'T'
Warnning: The seqeunce 'gi|LR026988.1|2460155_2460066|5.6e-05|Blumeria_graminis_f._sp._tritici_genome_assembly__chromosome__Bgt_-05' contains a 'U' replaced by 'T'
Warnning: The seqeunce 'gi|XR_002713435.1|133_61|5.7e-05|PREDICTED__Cucurbita_moschata_uncharacterized_LOC111460599__LOC111460599___transcript_variant_X8__ncRNA' contains a 'U' replaced by 'T'
Warnning: The seqeunce 'gi|XM_025901631.1|12066_11999|5.7e-05|PREDICTED__Oreochromis_niloticus_retrovirus-related_Pol_polyprotein_from_transposon_412__LOC102082561___transcript_variant_X1__mRNA' contains a 'U' replaced by 'T'
Warnning: The seqeunce 'gi|CP034210.1|353934_354024|5.8e-05|Pyricularia_oryzae_isolate_MZ5-1-6_chromosome_7__complete_sequence' contains a 'U' replaced by 'T'
Warnning: The seqeunce 'gi|OY734958.1|1566198_1566134|6e-05|Spergularia_bocconei_genome_assembly__chromosome__17' contains a 'U' replaced by 'T'
Warnning: The seqeunce 'gi|CP109671.1|1215970_1215878|6e-05|Fusarium_avenaceum_strain_WV21P1A_chromosome_3' contains a 'U' replaced by 'T'
Warnning: The seqeunce 'gi|CP015980.1|2238022_2237918|6.4e-05|Saccharomycopsis_fibuligera_strain_ATCC_36309_chromosome_3__partial_sequence' contains a 'U' replaced by 'T'
Warnning: The seqeunce 'gi|CP052049.1|927010_927102|6.8e-05|Fusarium_oxysporum_Fo47_chromosome_XII' contains a 'U' replaced by 'T'
Warnning: The seqeunce 'gi|OY288291.1|13021793_13021722|6.8e-05|Hibiscus_tridactylites_genome_assembly__chromosome__27' contains a 'U' replaced by 'T'
Warnning: The seqeunce 'gi|CP017816.1|2045840_2045749|7e-05|Sclerotinia_sclerotiorum_chromosome_3__complete_sequence' contains a 'U' replaced by 'T'
Warnning: The seqeunce 'gi|CP028443.1|387003_386924|7.2e-05|Yarrowia_lipolytica_strain_H222__CLIB_80__chromosome_B' contains a 'U' replaced by 'T'
Warnning: The seqeunce 'gi|CP015980.1|1701250_1701354|7.4e-05|Saccharomycopsis_fibuligera_strain_ATCC_36309_chromosome_3__partial_sequence' contains a 'U' replaced by 'T'
Warnning: The seqeunce 'gi|AP024993.1|2689785_2689713|8e-05|Coccomyxa_sp._Obi_DNA__chromosome_6__complete_sequence' contains a 'U' replaced by 'T'
Warnning: The seqeunce 'gi|CP025648.1|15047658_15047728|8e-05|Ipomoea_trifida_cultivar_NCNSP0306_chromosome_5' contains a 'U' replaced by 'T'
Warnning: The seqeunce 'gi|CP123894.1|4352866_4352803|8.8e-05|Brassica_napus_cultivar_Xiang5A_chromosome_19' contains a 'U' replaced by 'T'
Warnning: The seqeunce 'gi|LR026990.1|2544288_2544374|9e-05|Blumeria_graminis_f._sp._tritici_genome_assembly__chromosome__Bgt_-07' contains a 'U' replaced by 'T'
Warnning: The seqeunce 'gi|CP115650.1|2689362_2689456|9.4e-05|Magnusiomyces_capitatus_strain_LA-1_chromosome_3' contains a 'U' replaced by 'T'
Warnning: The seqeunce 'gi|OU594956.1|400023_400081|9.4e-05|Phaeodactylum_tricornutum_isolate_CCAP_1055/1_genome_assembly__chromosome__15' contains a 'U' replaced by 'T'
Warnning: The seqeunce 'gi|CP068502.1|331958_331876|9.5e-05|Stagonosporopsis_rhizophila_strain_XDPOP-RS-16W_chromosome_2' contains a 'U' replaced by 'T'
Warnning: The seqeunce 'gi|CP071499.1|2638857_2638765|0.00011|Podospora_comata_strain_Wa139-_chromosome_7__complete_sequence' contains a 'U' replaced by 'T'
Warnning: The seqeunce 'gi|LR026989.1|10085620_10085705|0.00012|Blumeria_graminis_f._sp._tritici_genome_assembly__chromosome__Bgt_-06' contains a 'U' replaced by 'T'
Warnning: The seqeunce 'gi|CP003003.1|4615533_4615627|0.00012|Myceliophthora_thermophila_ATCC_42464_chromosome_2__complete_sequence' contains a 'U' replaced by 'T'
Warnning: The seqeunce 'gi|OZ002728.1|47220772_47220711|0.00013|Polygonum_maritimum_genome_assembly__chromosome__1' contains a 'U' replaced by 'T'
Warnning: The seqeunce 'gi|OY987318.1|2055508_2055579|0.00014|Geranium_rotundifolium_genome_assembly__chromosome__8' contains a 'U' replaced by 'T'
Warnning: The seqeunce 'gi|CP025648.1|15052844_15052903|0.00014|Ipomoea_trifida_cultivar_NCNSP0306_chromosome_5' contains a 'U' replaced by 'T'
Warnning: The seqeunce 'gi|CP039352.1|35320240_35320171|0.00015|Vigna_unguiculata_cultivar_Xiabao_2_chromosome_Vu10' contains a 'U' replaced by 'T'
Warnning: The seqeunce 'gi|OX459106.1|11688377_11688307|0.00015|Metridium_senile_genome_assembly__chromosome__12' contains a 'U' replaced by 'T'
Warnning: The seqeunce 'gi|CP115648.1|333777_333873|0.00016|Magnusiomyces_capitatus_strain_LA-1_chromosome_1' contains a 'U' replaced by 'T'
Warnning: The seqeunce 'gi|CP088258.1|5565056_5564962|0.00016|Fusarium_asiaticum_strain_KCTC_16664_chromosome_2' contains a 'U' replaced by 'T'
Warnning: The seqeunce 'gi|XR_002713435.1|320_250|0.00017|PREDICTED__Cucurbita_moschata_uncharacterized_LOC111460599__LOC111460599___transcript_variant_X8__ncRNA' contains a 'U' replaced by 'T'
Warnning: The seqeunce 'gi|LR026993.1|6285245_6285159|0.00018|Blumeria_graminis_f._sp._tritici_genome_assembly__chromosome__Bgt_-10' contains a 'U' replaced by 'T'
Warnning: The seqeunce 'gi|OZ005719.1|12169432_12169500|0.00019|Labrus_bergylta_genome_assembly__chromosome__11' contains a 'U' replaced by 'T'
Warnning: The seqeunce 'gi|LR699109.1|6528061_6528134|0.00019|Asterias_rubens_genome_assembly__chromosome__18' contains a 'U' replaced by 'T'
Warnning: The seqeunce 'gi|LN649231.1|6936680_6936587|0.00019|Fusarium_venenatum_strain_A3/5_genome_assembly__chromosome__III' contains a 'U' replaced by 'T'
Warnning: The seqeunce 'gi|CP109669.1|2789043_2789136|0.0002|Fusarium_avenaceum_strain_WV21P1A_chromosome_7' contains a 'U' replaced by 'T'
Warnning: The seqeunce 'gi|XR_002812630.1|686_629|0.00021|PREDICTED__Cucurbita_pepo_subsp._pepo_uncharacterized_LOC111779014__LOC111779014___ncRNA' contains a 'U' replaced by 'T'
Warnning: The seqeunce 'gi|CP048715.1|955762_955834|0.00021|Cyberlindnera_fabianii_isolate_JOY008_chromosome_1' contains a 'U' replaced by 'T'
Warnning: The seqeunce 'gi|CP085828.1|3923160_3923067|0.00021|Calonectria_ilicicola_strain_GDYJ169_chromosome_4' contains a 'U' replaced by 'T'
The best evolutionary model was selected to be: GTR. (details).