NO
To predict 3D structure for the query protein using MODELLER, please provide
MODELER license key
ConSurf offer a 3D model predicted by HHPred and MODELLER for protein-query sequence.
To use MODELLER a user required for MODELLER-key; To obtain a MODELLER-key please contact the
Sali lab .
The key is freely available for academic users, and is provided automatically, without manual intervention, for users who are identifiable as such.
Optional
Upload your Multiple Sequece Alignment file:
ConSurf accepts external MSAs in the 7 formats supported by
CLUSTAL W . These are: NBRF/PIR, EMBL/SwissProt, Pearson (Fasta), GDE, Clustal, GCG/MSF and RSF format.
In case you provide an external MSA file in Fasta format, please use the "-" sign as the only gap symbol, as this is the only standard gap sign that ConSurf accepts.
Upload your Multiple Sequece Alignment file:
ConSurf accepts external MSAs in the 7 formats supported by
CLUSTAL W . These are: NBRF/PIR, EMBL/SwissProt, Pearson (Fasta), GDE, Clustal, GCG/MSF and RSF format.
In case you provide an external MSA file in Fasta format, please use the "-" sign as the only gap symbol, as this is the only standard gap sign that ConSurf accepts.
AND
Indicate the Query Sequence Name:
This should be the exact name of the sequence in the provided MSA file, that corresponds to the query protein.
Alignment program
MAFFT-L-INS-i
PRANK
CLUSTALW
Nucleotides Database
Maximum Homologs to collect
Maximal %ID Between Sequences
Minimal %ID For Homologs
BLAST E-value Cutoff
Let me select the sequences for the analysis manually out of Blast results