Warning You are using a web browser that we do not support. Our website will not work properly. Please update to a newer version or download a new web browser, such as Chrome or Firefox.

ConSurf Job Status Page - FINISHED

Go to the results


If you wish to view these results at a later time without recalculating them, please bookmark this page. The results will be kept on the server for one month.

Job number and title:

Job number 1496496325, titled: Gal4 transcription factor in yeast (3COQ:A) - Gallery

Running Parameters:

Structure
   PDB ID: 3coq
   Chain identifier: A
Alignment
   Multiple Sequence Alignment was built using MAFFT
   The Homologues were collected from UNIREF90
   Homolog search algorithm: HMMER
   HMMER E-value: 0.0001
   No. of HMMER Iterations: 1

   Maximal %ID Between Sequences : 95
   Minimal %ID For Homologs : 35
   150 sequences that sample the list of homologues to the query.

Phylogenetic Tree
   Neighbor Joining with ML distance
Conservation Scores
   Method of Calculation: Bayesian
   Model of substitution for proteins: Best fit

Run progress:

    • Extract sequence from PDB file
    • Find sequence homologs
    • Align sequences
    • Select best evolutionary model
    • Calculate conservation scores
    • Project conservation scores onto the molecule

Running Messages:

ConSurf calculation is finished:

Warning: 10 of 89 residues have unreliable conservation scores due to insufficient data in the multiple sequence alignment

Final Results

PDB Files

Create high resolution figures

Sequence Data

Alignment

      Alignment details
      The average number of replacements between any two sequences in the alignment;
      A distance of 0.01 means that on average, the expected replacement for every 100 positions is 1.
      Average pairwise distance : 1.2677
      Lower bound : 0.0326902
      Upper bound : 2.388

Phylogenetic Tree




Project ConSurf scores on the protein most probable assembly

RasMol Coloring Scripts

PDB Files

Create a high resolution figures