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Server for the Identification of Functional Regions in Proteins

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Job number and title:

Job number 1456683221, titled: 2POL

Running Parameters:

   PDB ID: 2pol
   Chain identifier: A
   Multiple Sequence Alignment was built using MAFFT
   The Homologues were collected from UNIREF90
   Homolog search algorithm: CS-BLAST
   CSI-BLAST E-value: 0.0001
   No. of CSI-BLAST Iterations: 3
   Maximal %ID Between Sequences : 95
   Minimal %ID For Homologs : 35
   Max. Number of Homologues:150

Phylogenetic Tree
   Neighbor Joining with ML distance
Conservation Scores
   Method of Calculation: Bayesian
   Model of substitution for proteins: BEST

Run progress:

ConSurf calculation is finished:

Final Results

PDB Files

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Sequence Data


      Alignment details
      The average number of replacements between any two sequences in the alignment;
      A distance of 0.01 means that on average, the expected replacement for every 100 positions is 1.
      Average pairwise distance : 0.638035
      Lower bound : 0.0816683
      Upper bound : 1.2849

Phylogenetic Tree

Project ConSurf scores on the protein most probable assembly

RasMol Coloring Scripts

PDB Files

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