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ConSurf Job Status Page - FINISHED

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Job number and title:

Job number 1496496375, titled: Phe-tRNA (1EHZ:A) - Gallery

Running Parameters:

Structure
   PDB ID: 1ehz
   Chain identifier: A
Alignment
   MSA File: RF00005_CDHIT08_with_4TNA1.MAFFT_LINSI_u_replaced_with_t.aln
   Query sequence name in MSA file: 4TNA

Phylogenetic Tree
   Neighbor Joining with ML distance
Conservation Scores
   Method of Calculation: Bayesian
   Model of substitution for nucleotides: Best fit

Run progress:

    • Extract sequence from PDB file
    • Select best evolutionary model
    • Calculate conservation scores
    • Project conservation scores onto the molecule

Running Messages:

ConSurf calculation is finished:

Final Results

PDB Files

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Alignment

      Alignment details
      The average number of replacements between any two sequences in the alignment;
      A distance of 0.01 means that on average, the expected replacement for every 100 positions is 1.
      Average pairwise distance : 1.1434
      Lower bound : 0.221843
      Upper bound : 4.95762

Phylogenetic Tree